system ontology graph

added a lot to it based on learnings today with creating for LOD and how this affects how I code and build systems

specs/3_product_development_s/.gitkeep.md

@@ -1 +0,0 @@
-keep

specs/3_product_development_s/system-ontology-framework/app.js

@@ -0,0 +1,286 @@
+console.log('APP.JS LOADED');
+
+const GRAPH_URL = 'lod_graph_cytoscape.json';
+
+function cleanValue(value) {
+  if (value == null) {
+    return null;
+  }
+
+  if (typeof value === 'string') {
+    const trimmed = value.trim();
+    if (!trimmed || trimmed.toLowerCase() === 'nan' || trimmed.toLowerCase() === 'undefined') {
+      return null;
+    }
+    return trimmed;
+  }
+
+  if (typeof value === 'number' && Number.isNaN(value)) {
+    return null;
+  }
+
+  return value;
+}
+
+function normalizeId(value) {
+  const cleaned = cleanValue(value);
+  return cleaned == null ? null : String(cleaned).trim();
+}
+
+function pickNodeId(data, index) {
+  const rawId = normalizeId(data['node-id'])
+    || normalizeId(data.label)
+    || normalizeId(data.name)
+    || normalizeId(data.id);
+
+  if (!rawId || rawId.startsWith('{')) {
+    return 'node-' + (index + 1);
+  }
+
+  return rawId;
+}
+
+function pickLabel(data, fallbackId) {
+  return normalizeId(data.label)
+    || normalizeId(data['node-id'])
+    || normalizeId(data.name)
+    || normalizeId(data['sub-module'])
+    || fallbackId;
+}
+
+function normalizePayload(payload) {
+  if (Array.isArray(payload)) {
+    return payload;
+  }
+
+  if (Array.isArray(payload && payload.elements)) {
+    return payload.elements;
+  }
+
+  const nodes = Array.isArray(payload && payload.nodes) ? payload.nodes : [];
+  const edges = Array.isArray(payload && payload.edges) ? payload.edges : [];
+  return nodes.concat(edges);
+}
+
+function buildGraph(rawItems) {
+  const nodes = [];
+  const edges = [];
+  const nodeIds = new Set();
+
+  rawItems.forEach(function (item, index) {
+    const data = (item && item.data) || item || {};
+    const source = normalizeId(data.source || data.from);
+    const target = normalizeId(data.target || data.to);
+
+    if (source && target) {
+      edges.push({
+        data: {
+          id: normalizeId(data.id) || 'edge-' + (edges.length + 1),
+          source: source,
+          target: target,
+          label: normalizeId(data.label) || '',
+          'edge-type': normalizeId(data['edge-type']) || normalizeId(data.label) || '',
+          entity: normalizeId(data.entity),
+          execution: normalizeId(data.execution),
+          schedule: normalizeId(data.schedule),
+          criticality: normalizeId(data.criticality)
+        }
+      });
+      return;
+    }
+
+    const id = pickNodeId(data, index);
+    if (!id || nodeIds.has(id)) {
+      return;
+    }
+
+    nodeIds.add(id);
+    nodes.push({
+      data: {
+        id: id,
+        label: pickLabel(data, id),
+        type: normalizeId(data.type),
+        module: normalizeId(data.module),
+        submodule: normalizeId(data['sub-module']),
+        codebase: normalizeId(data['code-base']),
+        environment: normalizeId(data['execution-environment'])
+      }
+    });
+  });
+
+  const filteredEdges = edges.filter(function (edge) {
+    return nodeIds.has(edge.data.source) && nodeIds.has(edge.data.target);
+  });
+
+  return { nodes: nodes, edges: filteredEdges };
+}
+
+function setStatus(message, isError) {
+  const cyContainer = document.getElementById('cy');
+  cyContainer.innerHTML = '';
+  cyContainer.style.display = 'grid';
+  cyContainer.style.placeItems = 'center';
+  cyContainer.style.color = isError ? '#9f1239' : '#1f2937';
+  cyContainer.style.font = '600 16px/1.4 system-ui, sans-serif';
+  cyContainer.textContent = message;
+}
+
+function colorForType(type) {
+  const normalized = (type || '').toLowerCase();
+
+  if (normalized === 'ui') {
+    return '#2563eb';
+  }
+
+  if (normalized === 'script') {
+    return '#0f766e';
+  }
+
+  if (normalized === 'datastore') {
+    return '#a16207';
+  }
+
+  return '#475569';
+}
+
+async function loadGraph() {
+  try {
+    const res = await fetch(GRAPH_URL, { cache: 'no-store' });
+    if (!res.ok) {
+      throw new Error('Fetch failed: ' + res.status + ' ' + res.statusText);
+    }
+
+    const rawText = await res.text();
+    const sanitizedText = rawText.replace(/\bNaN\b/g, 'null');
+    const payload = JSON.parse(sanitizedText);
+    const rawItems = normalizePayload(payload);
+    const graph = buildGraph(rawItems);
+
+    console.log('GRAPH COUNTS:', {
+      rawItems: rawItems.length,
+      nodes: graph.nodes.length,
+      edges: graph.edges.length
+    });
+
+    if (!graph.nodes.length) {
+      setStatus('No valid nodes found in lod_graph_cytoscape.json', true);
+      return;
+    }
+
+    document.getElementById('cy').style.display = 'block';
+
+    graph.nodes.forEach(function (node) {
+      node.data.color = colorForType(node.data.type);
+    });
+
+    const cy = cytoscape({
+      container: document.getElementById('cy'),
+      elements: graph.nodes.concat(graph.edges),
+      style: [
+        {
+          selector: 'node',
+          style: {
+            label: 'data(label)',
+            'background-color': 'data(color)',
+            color: '#ffffff',
+            'text-wrap': 'wrap',
+            'text-max-width': 120,
+            'text-valign': 'center',
+            'text-halign': 'center',
+            'font-size': 12,
+            'font-weight': 700,
+            'text-outline-width': 2,
+            'text-outline-color': '#0f172a',
+            'text-outline-opacity': 0.18,
+            width: 72,
+            height: 72,
+            'border-width': 2,
+            'border-color': '#0f172a',
+            'border-opacity': 0.28,
+            'overlay-opacity': 0,
+            'shadow-blur': 18,
+            'shadow-color': '#0f172a',
+            'shadow-opacity': 0.12,
+            'shadow-offset-x': 0,
+            'shadow-offset-y': 6
+          }
+        },
+        {
+          selector: 'node[type = "UI"]',
+          style: {
+            shape: 'round-rectangle'
+          }
+        },
+        {
+          selector: 'node[type = "Datastore"]',
+          style: {
+            shape: 'diamond'
+          }
+        },
+        {
+          selector: 'node[type = "Script"]',
+          style: {
+            shape: 'ellipse'
+          }
+        },
+        {
+          selector: 'edge',
+          style: {
+            width: 3,
+            label: 'data(label)',
+            color: '#334155',
+            'font-size': 10,
+            'font-weight': 600,
+            'text-background-color': '#ffffff',
+            'text-background-opacity': 0.9,
+            'text-background-padding': 3,
+            'text-rotation': 'autorotate',
+            'curve-style': 'bezier',
+            'line-color': '#64748b',
+            'target-arrow-color': '#64748b',
+            'target-arrow-shape': 'triangle',
+            'arrow-scale': 1.1,
+            'overlay-opacity': 0
+          }
+        },
+        {
+          selector: 'edge[edge-type = "writes"]',
+          style: {
+            'line-style': 'dashed'
+          }
+        },
+        {
+          selector: 'edge[edge-type = "returns"]',
+          style: {
+            'line-color': '#7c3aed',
+            'target-arrow-color': '#7c3aed'
+          }
+        },
+        {
+          selector: 'edge[edge-type = "navigates"]',
+          style: {
+            'line-color': '#db2777',
+            'target-arrow-color': '#db2777'
+          }
+        }
+      ],
+      layout: {
+        name: 'breadthfirst',
+        directed: true,
+        spacingFactor: 1.15,
+        padding: 60,
+        fit: true,
+        animate: false
+      }
+    });
+
+    cy.ready(function () {
+      console.log('GRAPH READY:', cy.elements().length);
+    });
+  } catch (error) {
+    console.error('GRAPH LOAD FAILED:', error);
+    setStatus('Graph load failed: ' + error.message, true);
+  }
+}
+
+loadGraph();

specs/3_product_development_s/system-ontology-framework/graph_edges_nodes.json

@@ -0,0 +1,942 @@
+{
+  "nodes": [
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "file:login.js",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": "js",
+      "type": "Script",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "browser/client",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "file:login.html",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": "html",
+      "type": "UI",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "browser/client",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "login API",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": "py",
+      "type": "Script",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "browser/client",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "auth system",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": "py",
+      "type": "Script",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "backend/vm",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "environment config",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": ".env",
+      "type": "Datastore",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "infrastructure",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "localStorage ",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": "browser DOM (in memory)",
+      "type": "Datastore",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "browser/client",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "file:dashboard.html",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": "html",
+      "type": "UI",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "browser/client",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": "DOM (#msg)",
+      "location": "srv/apps/lod-api/ui/static/",
+      "code-base": "browser DOM (in memory)",
+      "type": "Datastore",
+      "retry-policy": "no",
+      "indempotent": "yes",
+      "logging": "yes",
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": "browser/client",
+      "vm-environment": "lod-dev-app, lod-prod-app",
+      "owner": "system",
+      "external-connections": NaN,
+      "system-version": "1.0.0",
+      "component-version": "1.0.0",
+      "script-version": "1.0.0"
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": NaN,
+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": NaN,
+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": NaN,
+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": NaN,
+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": NaN,
+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
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+      "owner": NaN,
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+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
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+      "metrics": NaN,
+      "alerts": NaN,
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+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
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+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
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+      "metrics": NaN,
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+      "owner": NaN,
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+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
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+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
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+      "type": NaN,
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+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
+      "metrics": NaN,
+      "alerts": NaN,
+      "execution-environment": NaN,
+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
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+      "logging": NaN,
+      "metrics": NaN,
+      "alerts": NaN,
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+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
+      "logging": NaN,
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+      "alerts": NaN,
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+      "vm-environment": NaN,
+      "owner": NaN,
+      "external-connections": NaN,
+      "system-version": NaN,
+      "component-version": NaN,
+      "script-version": NaN
+    },
+    {
+      "module": "customer-db",
+      "sub-module": "login",
+      "active": "prod",
+      "node-id": NaN,
+      "location": NaN,
+      "code-base": NaN,
+      "type": NaN,
+      "retry-policy": NaN,
+      "indempotent": NaN,
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+    {
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+      "sub-module": "login",
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+  ],
+  "edges": [
+    {
+      "module": "customer-db",
+      "active": "prod",
+      "edge-id": "login.html-login.js-calls",
+      "from-node": "login.html",
+      "to-node": "login.js",
+      "edge-type": "calls",
+      "entity": "user",
+      "execution": "user",
+      "schedule": "on submit",
+      "state-transition": "submitted",
+      "dependencies": "login.html",
+      "criticality": "high",
+      "execution-environment": "browser/client"
+    },
+    {
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+    },
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+      "edge-id": "login.js-login API (/login)   (API)-calls",
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+      "to-node": "login API (/login)   (API)",
+      "edge-type": "calls",
+      "entity": "credentials",
+      "execution": "user",
+      "schedule": "on submit",
+      "state-transition": "validated",
+      "dependencies": "login.html",
+      "criticality": "high",
+      "execution-environment": "backend/vm"
+    },
+    {
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+      "active": "prod",
+      "edge-id": "login API (/login)   (API)-environment config   (DataStore / External)-reads",
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+      "execution-environment": "backend/vm"
+    },
+    {
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+      "active": "prod",
+      "edge-id": "login API (/login)   (API)-auth system          (Script / Backend logic)-validates",
+      "from-node": "login API (/login)   (API)",
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+      "edge-type": "validates",
+      "entity": "credentials",
+      "execution": "user",
+      "schedule": "on submit",
+      "state-transition": "authenticated",
+      "dependencies": "login.js",
+      "criticality": "high",
+      "execution-environment": "infrastructure"
+    },
+    {
+      "module": "customer-db",
+      "active": "prod",
+      "edge-id": "login API (/login)   (API)-login.js-returns",
+      "from-node": "login API (/login)   (API)",
+      "to-node": "login.js",
+      "edge-type": "returns",
+      "entity": "token",
+      "execution": "user",
+      "schedule": "on submit",
+      "state-transition": "authenticated",
+      "dependencies": "login.js",
+      "criticality": "high",
+      "execution-environment": "backend/vm"
+    },
+    {
+      "module": "customer-db",
+      "active": "prod",
+      "edge-id": "login.js-localStorage         (DataStore)-writes",
+      "from-node": "login.js",
+      "to-node": "localStorage         (DataStore)",
+      "edge-type": "writes",
+      "entity": "token",
+      "execution": "user",
+      "schedule": "on submit",
+      "state-transition": "authenticated",
+      "dependencies": "login.js",
+      "criticality": "high",
+      "execution-environment": "browser/client"
+    },
+    {
+      "module": "customer-db",
+      "active": "prod",
+      "edge-id": "login.js-dashboard.html       (UI)-navigates",
+      "from-node": "login.js",
+      "to-node": "dashboard.html       (UI)",
+      "edge-type": "navigates",
+      "entity": "token, session",
+      "execution": "user",
+      "schedule": "on submit",
+      "state-transition": "authenticated",
+      "dependencies": "login.js",
+      "criticality": "high",
+      "execution-environment": "browser/client"
+    },
+    {
+      "module": "customer-db",
+      "active": "prod",
+      "edge-id": "login.js-DOM (#msg)           (UI component, optional)-writes",
+      "from-node": "login.js",
+      "to-node": "DOM (#msg)           (UI component, optional)",
+      "edge-type": "writes",
+      "entity": "error message",
+      "execution": "user",
+      "schedule": "on submit",
+      "state-transition": "authenticated",
+      "dependencies": "login.js",
+      "criticality": "high",
+      "execution-environment": "browser/client"
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+    }
+  ]
+}

specs/3_product_development_s/system-ontology-framework/index.html

@@ -0,0 +1,170 @@
+<!DOCTYPE html>
+<html lang="en">
+<head>
+  <meta charset="UTF-8">
+  <meta name="viewport" content="width=device-width, initial-scale=1.0">
+  <title>Login Graph</title>
+
+  <script src="https://unpkg.com/cytoscape@3.26.0/dist/cytoscape.min.js"></script>
+
+  <style>
+    :root {
+      --bg: #f4efe7;
+      --panel: rgba(255, 255, 255, 0.88);
+      --ink: #14213d;
+      --muted: #5b6475;
+      --line: rgba(20, 33, 61, 0.12);
+      --ui: #2563eb;
+      --script: #0f766e;
+      --data: #a16207;
+      --returns: #7c3aed;
+      --navigates: #db2777;
+    }
+
+    * {
+      box-sizing: border-box;
+    }
+
+    body {
+      margin: 0;
+      font-family: Georgia, "Times New Roman", serif;
+      color: var(--ink);
+      background:
+        radial-gradient(circle at top left, rgba(37, 99, 235, 0.14), transparent 28%),
+        radial-gradient(circle at top right, rgba(15, 118, 110, 0.14), transparent 26%),
+        linear-gradient(180deg, #f8f5ef 0%, var(--bg) 100%);
+    }
+
+    .page {
+      width: min(1400px, calc(100vw - 32px));
+      margin: 20px auto;
+      display: grid;
+      gap: 16px;
+    }
+
+    .hero {
+      display: grid;
+      gap: 10px;
+      padding: 20px 24px;
+      border: 1px solid var(--line);
+      border-radius: 20px;
+      background: var(--panel);
+      backdrop-filter: blur(10px);
+      box-shadow: 0 16px 42px rgba(20, 33, 61, 0.08);
+    }
+
+    .eyebrow {
+      margin: 0;
+      font-size: 12px;
+      font-weight: 700;
+      letter-spacing: 0.18em;
+      text-transform: uppercase;
+      color: var(--muted);
+    }
+
+    h1 {
+      margin: 0;
+      font-size: clamp(28px, 4vw, 44px);
+      line-height: 1;
+    }
+
+    .subtitle {
+      margin: 0;
+      max-width: 900px;
+      color: var(--muted);
+      font-size: 16px;
+      line-height: 1.5;
+    }
+
+    .legend {
+      display: flex;
+      flex-wrap: wrap;
+      gap: 10px;
+      align-items: center;
+    }
+
+    .chip {
+      display: inline-flex;
+      align-items: center;
+      gap: 8px;
+      padding: 8px 12px;
+      border-radius: 999px;
+      border: 1px solid var(--line);
+      background: rgba(255, 255, 255, 0.72);
+      color: var(--ink);
+      font-size: 14px;
+      font-weight: 600;
+    }
+
+    .swatch {
+      width: 12px;
+      height: 12px;
+      border-radius: 999px;
+      background: currentColor;
+      box-shadow: inset 0 0 0 1px rgba(20, 33, 61, 0.15);
+    }
+
+    .graph-shell {
+      padding: 14px;
+      border: 1px solid var(--line);
+      border-radius: 24px;
+      background: rgba(255, 255, 255, 0.78);
+      box-shadow: 0 20px 48px rgba(20, 33, 61, 0.08);
+    }
+
+    #cy {
+      width: 100%;
+      height: 76vh;
+      min-height: 620px;
+      border-radius: 18px;
+      border: 1px solid rgba(20, 33, 61, 0.08);
+      background:
+        linear-gradient(rgba(20, 33, 61, 0.04) 1px, transparent 1px),
+        linear-gradient(90deg, rgba(20, 33, 61, 0.04) 1px, transparent 1px),
+        linear-gradient(180deg, rgba(255, 255, 255, 0.98), rgba(248, 250, 252, 0.96));
+      background-size: 32px 32px, 32px 32px, auto;
+      overflow: hidden;
+    }
+
+    @media (max-width: 800px) {
+      .page {
+        width: min(100vw - 16px, 1400px);
+        margin: 8px auto 16px;
+      }
+
+      .hero,
+      .graph-shell {
+        padding: 14px;
+        border-radius: 18px;
+      }
+
+      #cy {
+        height: 72vh;
+        min-height: 520px;
+      }
+    }
+  </style>
+</head>
+<body>
+  <main class="page">
+    <section class="hero">
+      <p class="eyebrow">System Graph</p>
+      <h1>Login Flow Map</h1>
+      <p class="subtitle">Cytoscape view of the login-side app graph, showing browser UI, scripts, datastores, and the relationships between them.</p>
+      <div class="legend" aria-label="Graph legend">
+        <span class="chip"><span class="swatch" style="color: var(--ui);"></span>UI node</span>
+        <span class="chip"><span class="swatch" style="color: var(--script);"></span>Script node</span>
+        <span class="chip"><span class="swatch" style="color: var(--data);"></span>Datastore node</span>
+        <span class="chip"><span class="swatch" style="color: var(--returns);"></span>Return edge</span>
+        <span class="chip"><span class="swatch" style="color: var(--navigates);"></span>Navigation edge</span>
+      </div>
+    </section>
+
+    <section class="graph-shell">
+      <div id="cy"></div>
+    </section>
+  </main>
+
+  <script src="app.js"></script>
+</body>
+</html>

specs/3_product_development_s/system-ontology-framework/system-ontology-framework.md

@@ -0,0 +1,172 @@
+# C4 Model (industry standard)
+
+1. Context (system in the world)
+2. Container (apps/services)
+3. Component (modules inside apps)
+4. Code (classes/functions)
+
+## Tools
+
+### graphical interface (lucidchart)
+- start here to map the system
+- this is for high-level thinking, presentation, human UI
+
+### spreadsheet (System catalog / service registry / data dictionary hybrid)
+
+As youi build the system and its files and components, you create a machine-readable system graph that is a declarative system model where everything is described, and everything else is derived from it:
+- diagrams
+- monitoring
+- orchestration
+- agents
+The spreadsheet is the SOURCE OF TRUTH. JSON is a derived artifact. The Cytoscape graph is a VIEW. Never manually edit JSON long-term — generate it.
+
+Ai can use this to:
+1. generate diagrams automatially
+2. detect issueso
+- orphaned components
+- circular dependencies
+- unused scripts
+- data inconsistencies
+3. build agents
+- “Find all nodes where operation=VALIDATE and auto-optimize”
+4. simulate system
+- what happens if ...
+- what breaks if ...
+5.generate code scaffolding
+- FastAPI routes
+- cron jobs
+- validators
+6. build inference layer
+See template. 
+
+### Process
+1. build graphical interface for human documenting components and flow. Build in small, disrete modules you can put a box around that is on its own.  Define flows, outcomes.  Then, define nodes and edges - ontology draft
+2. Code the components
+3. Have AI create the actual graph in the spreadsheet based on the templates - see in same folder for this file. Create in csv, copy and save as csv, open csv in spreadsheet, copy to gsheets file. Try to fit to validators sheet 
+4. Have AI build the corresponding json file. Invalid JSON (e.g. NaN) → graph will not render. See template of prior one created - graph_edges_nodes.json This is ontology final
+4. Create browser-based cytoscape graph viewer - instructions below
+5. Fix mismatches between ontologt draft and ontology final
+
+#### Example:
+
+Add Customer Module
+Trigger: user submits form
+Input: customer data
+Process:
+    validate → write → index update
+Output:
+    new customer JSON
+
+Graph:
+
+UI → API → validate → storage → index → response
+
+If a module does more than one of these → it’s too big.
+
+#### Practical Rules for Your Future Builds
+1. Rule 1 — Always start with flow
+
+Before coding:
+
+User action → API → validation → storage → response
+
+2. Rule 2 — Cap module size
+
+If a module:
+
+touches > 5 files
+has > 1 primary route
+
+👉 split it
+
+3. Rule 3 — Every module must be drawable as a box
+
+If you can’t draw a clean box around it:
+
+👉 it’s not a module yet
+
+4. Rule 4 — Graph is not documentation
+
+This is important:
+
+Your graph is not a diagram — it is a system constraint
+
+You should be able to say:
+
+“this edge is invalid”
+“this node should not exist”
+
+### System Graph
+
+1. Create project in WSL
+mkdir ~/(name)-system-graph
+cd ~/(name)-system-graph
+2. create index.html - adjust file name being rendered (step 4)
+3. create app.js - adjust file name being rendered (step 4)
+4. convert spreadsheet to JSON and create _(name)_graph_cytoscape.json
+- - JSON MUST be a flat array of Cytoscape elements:
+
+[
+  { data: { id, label } },
+  { data: { source, target } }
+]
+
+NOT:
+{ nodes: [...], edges: [...] }
+- - Node IDs must be:
+- - - exact string match
+-  - -trimmed (no trailing spaces)
+-  - - no annotations (remove "(API)", "(DB)", etc.)
+Edges must reference these exact IDs.
+5. copy to WSl folder  cp /mnt/c/Users/<your-user>/Desktop/lod_graph_cytoscape.json ~/system-graph/
+5. run on wsl: python3 -m http.server 8000
+6. http://localhost:8000
+7. Always edit the file the server is serving (WSL). Invalid JSON (e.g. NaN) → graph will not render. Node IDs must match edge references exactly. Use fetch debug to verify actual runtime data
+- - fetch('lod_graph_cytoscape.json')
+  .then(r => r.text())
+  .then(console.log)
+8. Edit and adjust scripts as needed using codex desktop or in terminal, then output the files to desktop to save cp ~/system-graph/app.js ~/system-graph/index.html ~/system-graph/lod_graph_cytoscape.json /mnt/c/Users/edsoe/Desktop/
+
+
+## Other
+
+### Add environment boundary rule (this was THE issue)
+
+You mention copying, but not the underlying principle.
+
+Add:
+
+The browser only sees files served by the WSL server.
+
+Editing files on Desktop has no effect until copied into WSL.
+
+Always verify the runtime file, not the edited file.
+
+### Add minimal test graph (for sanity check)
+
+This is a must-have reset tool:
+
+[
+  { "data": { "id": "A", "label": "A" } },
+  { "data": { "id": "B", "label": "B" } },
+  { "data": { "id": "e1", "source": "A", "target": "B" } }
+]
+
+Use when debugging pipeline.
+
+### Add layout note (optional but useful)
+Default layout: cose (force-directed)
+
+If graph looks flat or clustered:
+- adjust layout
+- or check connectivity
+
+### Common Failure Modes
+- | Symptom              | Cause                               |
+| -------------------- | ----------------------------------- |
+| Blank graph          | JSON invalid OR fetch failed        |
+| “Unexpected token N” | NaN in JSON                         |
+| A→B→C won’t change   | editing wrong file (WSL vs Desktop) |
+| Graph collapsed      | edge references missing nodes       |
+| No console logs      | app.js not loaded                   |
+

specs/3_product_development_s/system-ontology-framework/system-ontology-validators.csv

@@ -0,0 +1,28 @@
+module,sub-module,active,node-id,code-base,type,retry-policy-indempotent,logging,metrics,execution-environment,vm-environment,owner,from-node-to-node,edge-type,entity,execution,schedule,state-transition,dependencies,observability-hooks,criticality
+customer-db,login,prod,file:login.js,html,UI,yes,yes,,browser/client,lod-dev-app,system,file:login.js,calls,attachment file,user,1-minute,auth dependency loaded,file:login.js,logs,low
+,customers,dev,file:login.html,js,Script,no,no,,backend/vm,lod-prod-app,ingestion-agent,file:login.html,reads,attachment record,event,3-minutes,authenticated,file:login.html,metrics,medium
+,,ideation,login API,py,Datastore,,print-based,,infrastructure,,inference-agent,login API,writes,auth token,cron,5-minutes,authorized,login API,alerts,high
+,,archived,auth system,.env,Cron,,,,,,,auth system,triggers,chunk,manual,manual,chunked,auth system,,
+,,,environment config,browser DOM (in memory),Template,,,,,,,environment config,validates,credentials,,on change,config loaded,environment config,,
+,,,localStorage ,,API,,,,,,,localStorage ,transforms,customer index,,on load/reload,customer created/updated/deleted,localStorage ,,
+,,,file:dashboard.html,,Schema,,,,,,,file:dashboard.html,queues,customer json,,on login,customer loaded,file:dashboard.html,,
+,,,DOM (#msg),,External,,,,,,,DOM (#msg),depends_on,customer record,,on mutation,customer loaded/saved,DOM (#msg),,
+,,,file:auth.py,,Service,,,,,,,file:auth.py,returns,dog index,,on request,dog index built,file:auth.py,,
+,,,file:customer.py,,Config,,,,,,,file:customer.py,navigates,error message,,on submit,error,file:customer.py,,
+,,,file:customers_index.py,,,,,,,,,file:customers_index.py,imports,PID,,on upload,file persisted/json updated,file:customers_index.py,,
+,,,file:dogs.py,,,,,,,,,file:dogs.py,,session,,on upload,index built,file:dogs.py,,
+,,,file:upload.py,,,,,,,,,file:upload.py,,token,,on upload,index rebuild callable,file:upload.py,,
+,,,file:validators.py,,,,,,,,,file:validators.py,,user,,on upload,indexed,file:validators.py,,
+,,,file:main.py,,,,,,,,,file:main.py,,validation rules,,,inferred,file:main.py,,
+,,,file:requirements.txt,,,,,,,,,file:requirements.txt,,validator request,,,rules dependency loaded,file:requirements.txt,,
+,,,.venv,,,,,,,,,.venv,,,,,rules returned,.venv,,
+,,,_pycache_,,,,,,,,,_pycache_,,,,,storage dependency loaded,_pycache_,,
+,,,file:storage.py,,,,,,,,,file:storage.py,,,,,submitted,file:storage.py,,
+,,,file:validate.py,,,,,,,,,file:validate.py,,,,,validated,file:validate.py,,
+,,,file:validators_config.py,,,,,,,,,file:validators_config.py,,,,,validated,file:validators_config.py,,
+,,,file:add_customer.js,,,,,,,,,file:add_customer.js,,,,,validation dependency loaded,file:add_customer.js,,
+,,,file:app.js,,,,,,,,,file:app.js,,,,,,file:app.js,,
+,,,file:dogs.html,,,,,,,,,file:dogs.html,,,,,,file:dogs.html,,
+,,,file:dogs.js,,,,,,,,,file:dogs.js,,,,,,file:dogs.js,,
+,,,file:edit_customer.html,,,,,,,,,file:edit_customer.html,,,,,,file:edit_customer.html,,
+,,,file:validators-ui.js,,,,,,,,,file:validators-ui.js,,,,,,file:validators-ui.js,,

specs/3_product_development_s/system-ontology-framework/system_ontology - edges.csv

@@ -0,0 +1 @@
+module,active,edge-id,from-node,to-node,edge-type,entity,execution,schedule,state-transition,dependencies,criticality,execution-environment

specs/3_product_development_s/system-ontology-framework/system_ontology - nodes.csv

@@ -0,0 +1 @@
+module,sub-module,active,node-id,location,code-base,type,retry-policy,indempotent,logging,metrics,alerts,execution-environment,vm-environment,owner,external-connections,system-version,component-version,script-version